The Regularizing Capacity of Metabolic Networks

نویسندگان

  • Carsten Marr
  • Mark Mueller-Linow
  • Marc-Thorsten Huett
چکیده

Despite their topological complexity almost all functional properties of metabolic networks can be derived from steady-state dynamics. Indeed, many theoretical investigations (like flux-balance analysis) rely on extracting function from steady states. This leads to the interesting question, how metabolic networks avoid complex dynamics and maintain a steady-state behavior. Here, we expose metabolic network topologies to binary dynamics generated by simple local rules. We find that the networks’ response is highly specific: Complex dynamics are systematically reduced on metabolic networks compared to randomized networks with identical degree sequences. Already small topological modifications substantially enhance the capacity of a network to host complex dynamic behavior and thus reduce its regularizing potential. This exceptionally pronounced regularization of dynamics encoded in the topology may explain, why steady-state behavior is ubiquitous in metabolism.

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Comment on "Regularizing capacity of metabolic networks".

In a recent paper, Marr, Müller-Linow, and Hütt [Phys. Rev. E 75, 041917 (2007)] investigate an artificial dynamic system on metabolic networks. They find a less complex time evolution of this dynamic system in real networks, compared to networks of null models. The authors argue that this suggests that metabolic network structure is a major factor behind the stability of biochemical steady sta...

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ar X iv : 0 70 5 . 40 84 v 1 [ q - bi o . M N ] 2 8 M ay 2 00 7 Comment on “ Regularizing capacity of metabolic networks ”

In a recent paper, Marr, Müller-Linow and Hütt [Phys. Rev. E 75, 041917 (2007)] investigate an artificial dynamic system on metabolic networks. They find a less complex time evolution of this dynamic system in real networks, compared to networks of reference models. The authors argue that this suggests that metabolic network structure is a major factor behind the stability of biochemical steady...

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Reply to ''Comment on 'Regularizing Capacity of Metabolic Networks' ''

In a recent paper [C. Marr, M. Müller-Linow, and M.-T. Hütt, Phys. Rev. E 75, 041917 (2007)] we discuss the pronounced potential of real metabolic network topologies, compared to randomized counterparts, to regularize complex binary dynamics. In their comment [P. Holme and M. Huss, arXiv:0705.4084v1], Holme and Huss criticize our approach and repeat our study with more realistic dynamics, where...

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تاریخ انتشار 2006